19401


Mus musculus (NCBI)

Features
Gene ID: 19401
  
Biological name :
  
Synonyms : Nr1b1|RAR|RARalpha1 / Rara / retinoic acid receptor, alpha
  
Possible biological names infered from orthology :
  
Species: Mus musculus (NCBI)
  
Chr. number:
Strand:
Band:
Gene start:
Gene end:
  
Corresponding Affymetrix probe sets: 1450180_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: RefSeq - 1039736167
RefSeq - 116734873
RefSeq - 1372261745
RefSeq - 293335963
RefSeq - 293336010
RefSeq - 293336061
RefSeq - 568972418
RefSeq - 568972420
RefSeq - 568972426
RefSeq - 568972428
RefSeq - NC_000077.6
RefSeq - NP_001169999.1
RefSeq - NP_001170773.1
RefSeq - NP_001170774.1
RefSeq - NP_001348883.1
RefSeq - NP_033050.2
RefSeq - XP_006532655.1
RefSeq - XP_006532656.1
RefSeq - XP_006532659.1
RefSeq - XP_006532660.1
RefSeq - XP_017169842.1
RefSeq - NM_001176528.1
RefSeq - NM_001177302.1
RefSeq - NM_001177303.1
RefSeq - NM_001361954.1
RefSeq - NM_009024.2
RefSeq - XM_006532592.3
RefSeq - XM_006532593.2
RefSeq - XM_006532596.2
RefSeq - XM_006532597.2
RefSeq - XM_017314353.1
  
See co-cited genes in PubMed
Warning: Please see the Ensembl gene model ENSMUSG00000037992 to get all the annotations available for this gene.


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IGI
 biological_processGO:0001657 ureteric bud development IMP
 biological_processGO:0001843 neural tube closure IGI
 biological_processGO:0001889 liver development IBA
 biological_processGO:0002068 glandular epithelial cell development IGI
 biological_processGO:0003148 outflow tract septum morphogenesis IGI
 biological_processGO:0003417 growth plate cartilage development IGI
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0006468 protein phosphorylation ISO
 biological_processGO:0007165 signal transduction ISO
 biological_processGO:0007275 multicellular organism development IBA
 biological_processGO:0007281 germ cell development IMP
 biological_processGO:0007283 spermatogenesis IMP
 biological_processGO:0007420 brain development IBA
 biological_processGO:0007507 heart development IBA
 biological_processGO:0008284 positive regulation of cell proliferation ISO
 biological_processGO:0008285 negative regulation of cell proliferation ISO
 biological_processGO:0008584 male gonad development ISO
 biological_processGO:0009755 hormone-mediated signaling pathway IBA
 biological_processGO:0010628 positive regulation of gene expression IMP
 biological_processGO:0010629 negative regulation of gene expression IGI
 biological_processGO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling ISO
 biological_processGO:0017148 negative regulation of translation ISO
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0030852 regulation of granulocyte differentiation IMP
 biological_processGO:0030853 negative regulation of granulocyte differentiation ISO
 biological_processGO:0030855 epithelial cell differentiation IBA
 biological_processGO:0031076 embryonic camera-type eye development IGI
 biological_processGO:0031641 regulation of myelination ISO
 biological_processGO:0032526 response to retinoic acid ISO
 biological_processGO:0032689 negative regulation of interferon-gamma production ISO
 biological_processGO:0032720 negative regulation of tumor necrosis factor production ISO
 biological_processGO:0032736 positive regulation of interleukin-13 production ISO
 biological_processGO:0032753 positive regulation of interleukin-4 production ISO
 biological_processGO:0032754 positive regulation of interleukin-5 production ISO
 biological_processGO:0033993 response to lipid IBA
 biological_processGO:0035264 multicellular organism growth IGI
 biological_processGO:0042981 regulation of apoptotic process ISO
 biological_processGO:0043066 negative regulation of apoptotic process IGI
 biological_processGO:0043277 apoptotic cell clearance ISO
 biological_processGO:0045471 response to ethanol ISO
 biological_processGO:0045596 negative regulation of cell differentiation IMP
 biological_processGO:0045630 positive regulation of T-helper 2 cell differentiation ISO
 biological_processGO:0045666 positive regulation of neuron differentiation ISO
 biological_processGO:0045787 positive regulation of cell cycle ISO
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISO
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISO
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISO
 biological_processGO:0045947 negative regulation of translational initiation IDA
 biological_processGO:0048167 regulation of synaptic plasticity ISO
 biological_processGO:0048384 retinoic acid receptor signaling pathway ISO
 biological_processGO:0048568 embryonic organ development IBA
 biological_processGO:0048732 gland development IBA
 biological_processGO:0051099 positive regulation of binding ISO
 biological_processGO:0051897 positive regulation of protein kinase B signaling ISO
 biological_processGO:0055012 ventricular cardiac muscle cell differentiation IMP
 biological_processGO:0060010 Sertoli cell fate commitment IMP
 biological_processGO:0060173 limb development IGI
 biological_processGO:0060324 face development IGI
 biological_processGO:0060348 bone development IGI
 biological_processGO:0060349 bone morphogenesis IBA
 biological_processGO:0060429 epithelium development IBA
 biological_processGO:0060534 trachea cartilage development IMP
 biological_processGO:0060591 chondroblast differentiation IMP
 biological_processGO:0061037 negative regulation of cartilage development IMP
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade ISO
 biological_processGO:0071222 cellular response to lipopolysaccharide IDA
 biological_processGO:0071300 cellular response to retinoic acid ISO
 biological_processGO:0071391 cellular response to estrogen stimulus ISO
 cellular_componentGO:0000790 nuclear chromatin ISO
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005737 cytoplasm ISO
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0015629 actin cytoskeleton ISO
 cellular_componentGO:0030425 dendrite ISO
 cellular_componentGO:0043005 neuron projection ISO
 cellular_componentGO:0043025 neuronal cell body IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISO
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IBA
 molecular_functionGO:0000900 translation repressor activity, mRNA regulatory element binding ISO
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0001012 RNA polymerase II regulatory region DNA binding IDA
 molecular_functionGO:0001076 transcription factor activity, RNA polymerase II transcription factor binding IBA
 molecular_functionGO:0001972 retinoic acid binding ISO
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISO
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0003708 retinoic acid receptor activity ISO
 molecular_functionGO:0003713 transcription coactivator activity ISO
 molecular_functionGO:0003714 transcription corepressor activity ISO
 molecular_functionGO:0004879 nuclear receptor activity IDA
 molecular_functionGO:0005102 signaling receptor binding ISO
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding ISO
 molecular_functionGO:0008144 drug binding ISO
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019899 enzyme binding ISO
 molecular_functionGO:0019904 protein domain specific binding ISO
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity IBA
 molecular_functionGO:0031490 chromatin DNA binding ISO
 molecular_functionGO:0035014 phosphatidylinositol 3-kinase regulator activity ISO
 molecular_functionGO:0042826 histone deacetylase binding ISO
 molecular_functionGO:0043422 protein kinase B binding ISO
 molecular_functionGO:0043565 sequence-specific DNA binding IGI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IMP
 molecular_functionGO:0044323 retinoic acid-responsive element binding ISO
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity ISO
 molecular_functionGO:0048027 mRNA 5"-UTR binding ISO
 molecular_functionGO:0051018 protein kinase A binding ISO
 molecular_functionGO:0051393 alpha-actinin binding ISO
 molecular_functionGO:0098531 transcription factor activity, direct ligand regulated sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr