450057


Danio rerio (NCBI)
catabolicprocessrrnanuclear-endprocessingmrnaexonucleolyticusnrnaexosomernasecomplexsnuclear-transcribedtrimminggeneratematuretricistronictranscriptssu-rrnalsu-rrnarna-involveddeadenylation-dependentdecaysurveillancetrna

Features
Gene ID: 450057
  
Biological name :
  
Synonyms : exosc9 / exosome component 9 / im:6909054|zgc:101680
  
Possible biological names infered from orthology :
  
Species: Danio rerio (NCBI)
  
Chr. number:
Strand:
Band:
Gene start:
Gene end:
  
Corresponding Affymetrix probe sets: Dr.18150.1.S1_at (Zebrafish Array)   
  
Cross references: RefSeq - 54400656
RefSeq - NC_007112.7
RefSeq - NP_001006077.1
RefSeq - NM_001006077.1
  
See co-cited genes in PubMed
Warning: Please see the Ensembl gene model ENSDARG00000006392 to get all the annotations available for this gene.


Gene Ontology (GO)
nitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabnitrogen compound metabolic processcellular component biogcellular component biogenesiscellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processorganic substance metaborganic substance metabolic processcatabolic processcatabolic process
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellcellprotein-containing complexprotein-containing complexorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0000467 exonucleolytic trimming to generate mature 3"-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0016075 rRNA catabolic process IBA
 biological_processGO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3"-5" IBA
 biological_processGO:0034473 U1 snRNA 3"-end processing IBA
 biological_processGO:0034475 U4 snRNA 3"-end processing IBA
 biological_processGO:0034476 U5 snRNA 3"-end processing IBA
 biological_processGO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay IBA
 biological_processGO:0071028 nuclear mRNA surveillance IBA
 biological_processGO:0071035 nuclear polyadenylation-dependent rRNA catabolic process IBA
 biological_processGO:0071038 nuclear polyadenylation-dependent tRNA catabolic process IBA
 biological_processGO:0071042 nuclear polyadenylation-dependent mRNA catabolic process IBA
 cellular_componentGO:0000176 nuclear exosome (RNase complex) IBA
 cellular_componentGO:0000177 cytoplasmic exosome (RNase complex) IBA
 cellular_componentGO:0000178 exosome (RNase complex) IEA
 molecular_functionGO:0017091 AU-rich element binding IBA


Pathways (from Reactome)
Pathway description
No match


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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