6421


Homo sapiens (NCBI)

Features
Gene ID: 6421
  
Biological name :
  
Synonyms : POMP100|PPP1R140|PSF / SFPQ / splicing factor proline and glutamine rich
  
Possible biological names infered from orthology :
  
Species: Homo sapiens (NCBI)
  
Chr. number:
Strand:
Band:
Gene start:
Gene end:
  
Corresponding Affymetrix probe sets: 201585_s_at (Human Genome U133 Plus 2.0 Array)   201586_s_at (Human Genome U133 Plus 2.0 Array)   214016_s_at (Human Genome U133 Plus 2.0 Array)   221768_at (Human Genome U133 Plus 2.0 Array)   226898_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: RefSeq - 1034560973
RefSeq - 1034560975
RefSeq - 4826998
RefSeq - 530363142
RefSeq - 530363144
RefSeq - 530363148
RefSeq - 767905562
RefSeq - NC_000001.11
RefSeq - NP_005057.1
RefSeq - XP_005271169.1
RefSeq - XP_005271170.1
RefSeq - XP_005271172.1
RefSeq - XP_011540252.1
RefSeq - XP_016857542.1
RefSeq - XP_016857543.1
RefSeq - XM_011541950.2
RefSeq - XM_017002053.2
RefSeq - NM_005066.2
RefSeq - XM_017002054.2
RefSeq - NR_136702.1
RefSeq - NR_136703.1
RefSeq - XM_005271112.5
RefSeq - XM_005271113.5
RefSeq - XM_005271115.4
  
See co-cited genes in PubMed
Warning: Please see the Ensembl gene model ENSG00000116560 to get all the annotations available for this gene.


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IMP
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0000724 double-strand break repair via homologous recombination IMP
 biological_processGO:0002218 activation of innate immune response IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0042752 regulation of circadian rhythm ISS
 biological_processGO:0042754 negative regulation of circadian rhythm ISS
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045876 positive regulation of sister chromatid cohesion IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0048511 rhythmic process IEA
 biological_processGO:0070932 histone H3 deacetylation ISS
 biological_processGO:1902177 positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway IDA
 cellular_componentGO:0000785 chromatin IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016363 nuclear matrix IDA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0042382 paraspeckles IDA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex ISS
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding ISS
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding ISS
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISA
 molecular_functionGO:0003676 nucleic acid binding IBA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003682 chromatin binding ISS
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0042826 histone deacetylase binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0070888 E-box binding ISS


Pathways (from Reactome)
Pathway description
No match


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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