ENSDARG00000002402


Danio rerio

Features
Gene ID: ENSDARG00000002402
  
Biological name :ercc3
  
Synonyms : ercc3 / excision repair cross-complementation group 3
  
Possible biological names infered from orthology : ERCC excision repair 3, TFIIH core complex helicase subunit / P19447 / P49135 / TFIIH basal transcription factor complex helicase XPB subunit
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 9595414
Gene end: 9630081
  
Corresponding Affymetrix probe sets: Dr.1745.1.S1_at (Zebrafish Array)   NM_201582_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000010637
NCBI entrez gene - 324323     See in Manteia.
RefSeq - NM_201582
RefSeq Peptide - NP_963876
swissprot - F1R685
ZFIN ID - ZDB-GENE-030131-3043
Ensembl - ENSDARG00000002402
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ERCC3ENSGALG00000011515Gallus gallus
 ERCC3ENSG00000163161Homo sapiens
 Ercc3ENSMUSG00000024382Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001161  Helicase XPB/Ssl2
 IPR001650  Helicase, C-terminal
 IPR006935  Helicase/UvrB, N-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032438  ERCC3/RAD25/XPB helicase, C-terminal domain
 IPR032830  Helicase XPB/Ssl2, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0032508 DNA duplex unwinding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
mRNA Capping
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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