ENSDARG00000002830


Danio rerio

Features
Gene ID: ENSDARG00000002830
  
Biological name :trmt2a
  
Synonyms : trmt2a / tRNA methyltransferase 2 homolog A
  
Possible biological names infered from orthology : Q8BNV1 / Q8IZ69 / TRM2 tRNA methyltransferase 2A
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 24532401
Gene end: 24543526
  
Corresponding Affymetrix probe sets: Dr.5674.1.A1_at (Zebrafish Array)   NM_199929_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000155731
Ensembl peptide - ENSDARP00000046383
NCBI entrez gene - 334936     See in Manteia.
RefSeq - NM_199929
RefSeq Peptide - NP_956223
swissprot - A2BEG2
ZFIN ID - ZDB-GENE-030131-6876
Ensembl - ENSDARG00000002830
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRMT2AENSGALG00000002094Gallus gallus
 Q8IZ69ENSG00000099899Homo sapiens
 Q8BNV1ENSMUSG00000022721Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trmt2b / A4QP75 / tRNA methyltransferase 2 homolog B / Q96GJ1* / Q8BQJ6* / TRM2 tRNA methyltransferase 2B*ENSDARG0000003396727


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR010280  (Uracil-5)-methyltransferase family
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase
 IPR030390  RNA methyltransferase TrmA, active site
 IPR034262  TRMT2A, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001510 RNA methylation IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008173 RNA methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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