ENSDARG00000003027


Danio rerio

Features
Gene ID: ENSDARG00000003027
  
Biological name :scnm1
  
Synonyms : Q2YDS5 / scnm1 / sodium channel modifier 1
  
Possible biological names infered from orthology : Q8K136 / Q9BWG6
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 29685557
Gene end: 29690212
  
Corresponding Affymetrix probe sets: Dr.8454.1.A1_at (Zebrafish Array)   NM_001001813_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000026288
Ensembl peptide - ENSDARP00000118829
NCBI entrez gene - 321696     See in Manteia.
RefSeq - XM_005158161
RefSeq - NM_001001813
RefSeq Peptide - NP_001001813
swissprot - Q2YDS5
ZFIN ID - ZDB-GENE-030131-415
Ensembl - ENSDARG00000003027
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCNM1ENSGALG00000046607Gallus gallus
 SCNM1ENSG00000163156Homo sapiens
 Scnm1ENSMUSG00000092607Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR031622  Sodium channel modifier 1, zinc-finger
 IPR031625  Sodium channel modifier 1, acidic C-terminal domain
 IPR033570  Sodium channel modifier 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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