ENSDARG00000003487


Danio rerio

Features
Gene ID: ENSDARG00000003487
  
Biological name :nup93
  
Synonyms : nucleoporin 93 / nup93
  
Possible biological names infered from orthology : Mus musculus nucleoporin 93 (Nup93), transcript variant 4, mRNA. / Q8BJ71 / Q8N1F7
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 17537311
Gene end: 17580522
  
Corresponding Affymetrix probe sets: Dr.653.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000146697
Ensembl peptide - ENSDARP00000013627
Ensembl peptide - ENSDARP00000121567
NCBI entrez gene - 30172     See in Manteia.
swissprot - Q1LV08
swissprot - Q1LV09
ZFIN ID - ZDB-GENE-990415-46
Ensembl - ENSDARG00000003487
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUP93ENSGALG00000003010Gallus gallus
 NUP93ENSG00000102900Homo sapiens
 Nup93ENSMUSG00000032939Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007231  Nucleoporin interacting component Nup93/Nic96
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain apoptotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000100 cerebellum cerebellum apoptotic , abnormal
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 ZFA:0000107 eye eye quality , abnormal
eye decreased size , abnormal
eye protruding , abnormal
eye apoptotic , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0000128 midbrain midbrain apoptotic , abnormal
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 ZFA:0000282 sensory system sensory system quality , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0000445 optic tectum optic tectum necrotic , abnormal
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 ZFA:0001094 whole organism whole organism edematous , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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