ENSGALG00000003010


Gallus gallus

Features
Gene ID: ENSGALG00000003010
  
Biological name :NUP93
  
Synonyms : nucleoporin 93 / NUP93
  
Possible biological names infered from orthology : Mus musculus nucleoporin 93 (Nup93), transcript variant 4, mRNA. / Q8BJ71 / Q8N1F7
  
Species: Gallus gallus
  
Chr. number: 11
Strand: -1
Band:
Gene start: 2106867
Gene end: 2172556
  
Corresponding Affymetrix probe sets: Gga.18568.1.S1_at (Chicken Array)   Gga.5471.1.S1_at (Chicken Array)   GgaAffx.1918.1.S1_at (Chicken Array)   GgaAffx.25712.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051586
Ensembl peptide - ENSGALP00000059091
Ensembl peptide - ENSGALP00000004745
Ensembl peptide - ENSGALP00000043955
NCBI entrez gene - 415693     See in Manteia.
RefSeq - XM_015279144
RefSeq - NM_001012526
RefSeq - XM_015279139
RefSeq - XM_015279140
RefSeq - XM_015279141
RefSeq - XM_015279142
RefSeq Peptide - NP_001012544
swissprot - A0A1D5PFL9
swissprot - F1NEI9
swissprot - A0A1D5NUD8
swissprot - Q5F386
Ensembl - ENSGALG00000003010
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nup93ENSDARG00000003487Danio rerio
 NUP93ENSG00000102900Homo sapiens
 Nup93ENSMUSG00000032939Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007231  Nucleoporin interacting component Nup93/Nic96


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0006998 nuclear envelope organization IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016973 poly(A)+ mRNA export from nucleus IBA
 biological_processGO:0051028 mRNA transport IEA
 biological_processGO:0051292 nuclear pore complex assembly IBA
 biological_processGO:0060391 positive regulation of SMAD protein signal transduction IEA
 biological_processGO:0060395 SMAD protein signal transduction IEA
 biological_processGO:0072015 glomerular visceral epithelial cell development IEA
 biological_processGO:0090521 glomerular visceral epithelial cell migration IEA
 biological_processGO:1903206 negative regulation of hydrogen peroxide-induced cell death IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0034399 nuclear periphery IEA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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