ENSDARG00000003592


Danio rerio

Features
Gene ID: ENSDARG00000003592
  
Biological name :surf1
  
Synonyms : surf1 / surfeit 1
  
Possible biological names infered from orthology : P09925 / Q15526 / SURF1, cytochrome c oxidase assembly factor / Surfeit locus protein 1
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 33281105
Gene end: 33283718
  
Corresponding Affymetrix probe sets: Dr.14568.1.S1_at (Zebrafish Array)   NM_001080173_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000009060
NCBI entrez gene - 557970     See in Manteia.
RefSeq - NM_001080173
RefSeq Peptide - NP_001073642
swissprot - F1QUE8
ZFIN ID - ZDB-GENE-041108-2
Ensembl - ENSDARG00000003592
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SURF1ENSGALG00000033754Gallus gallus
 SURF1ENSG00000148290Homo sapiens
 Surf1ENSMUSG00000015790Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002994  Surfeit locus 1/Shy1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0021522 spinal cord motor neuron differentiation IMP
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:0048568 embryonic organ development IMP
 biological_processGO:1902600 proton transmembrane transport IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0004129 cytochrome-c oxidase activity IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut decreased size , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism lethal (sensu genetics) , abnormal
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 ZFA:0001114 head head shape , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
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 ZFA:0009247 secondary motor neuron secondary motor neuron spatial pattern , abnormal
secondary motor neuron decreased amount , abnormal
secondary motor neuron axon decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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