ENSDARG00000003841


Danio rerio

Features
Gene ID: ENSDARG00000003841
  
Biological name :usb1
  
Synonyms : Q6DEF6 / U6 snRNA biogenesis 1 / usb1
  
Possible biological names infered from orthology : Q9BQ65 / U6 snRNA biogenesis phosphodiesterase 1
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 13677299
Gene end: 13686751
  
Corresponding Affymetrix probe sets: Dr.13641.1.A1_at (Zebrafish Array)   NM_001003460_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000002264
NCBI entrez gene - 445066     See in Manteia.
RefSeq - XM_009297899
RefSeq - NM_001003460
RefSeq - XM_021470478
RefSeq - XM_009297898
RefSeq Peptide - NP_001003460
swissprot - Q6DEF6
ZFIN ID - ZDB-GENE-040801-197
Ensembl - ENSDARG00000003841
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USB1ENSGALG00000035604Gallus gallus
 USB1ENSG00000103005Homo sapiens
 Usb1ENSMUSG00000031792Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR027521  U6 snRNA phosphodiesterase Usb1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030097 hemopoiesis IMP
 biological_processGO:0030223 neutrophil differentiation IMP
 biological_processGO:0034477 U6 snRNA 3"-end processing IBA
 biological_processGO:0043484 regulation of RNA splicing IMP
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000175 3"-5"-exoribonuclease activity ISS
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure decreased amount , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk edematous , abnormal
Show

 ZFA:0000094 blood island blood island neutrophil decreased amount , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
trunk edematous , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage shape , abnormal
Meckels cartilage misaligned with palatoquadrate cartilage , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage kinked , abnormal
ceratohyal cartilage displaced , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage morphology , abnormal
Show

 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 aplastic/hypoplastic , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

 ZFA:0009327 neutrophil neutrophil decreased amount , abnormal
neutrophil decreased distribution , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr