ENSMUSG00000031792


Mus musculus

Features
Gene ID: ENSMUSG00000031792
  
Biological name :Usb1
  
Synonyms : U6 snRNA biogenesis 1 / Usb1
  
Possible biological names infered from orthology : Q9BQ65 / U6 snRNA biogenesis phosphodiesterase 1
  
Species: Mus musculus
  
Chr. number: 8
Strand: 1
Band: C5
Gene start: 95332284
Gene end: 95347507
  
Corresponding Affymetrix probe sets: 10574342 (MoGene1.0st)   1448583_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000034245
Ensembl peptide - ENSMUSP00000148673
Ensembl peptide - ENSMUSP00000122529
NCBI entrez gene - 101985     See in Manteia.
MGI - MGI:2142454
RefSeq - XM_017312496
RefSeq - NM_133954
RefSeq - XM_006530521
RefSeq Peptide - NP_598715
swissprot - D3Z5I2
swissprot - A0A0R4J0E0
swissprot - A0A1D5RM87
Ensembl - ENSMUSG00000031792
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usb1ENSDARG00000003841Danio rerio
 USB1ENSGALG00000035604Gallus gallus
 USB1ENSG00000103005Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009097  Cyclic phosphodiesterase
 IPR027521  U6 snRNA phosphodiesterase Usb1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0034477 U6 snRNA 3"-end processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0045171 intercellular bridge IEA
 molecular_functionGO:0000175 3"-5"-exoribonuclease activity IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:1990838 poly(U)-specific exoribonuclease activity, producing 3" uridine cyclic phosphate ends IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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