ENSDARG00000003974


Danio rerio

Features
Gene ID: ENSDARG00000003974
  
Biological name :spoplb
  
Synonyms : A0JMG1 / speckle-type POZ protein-like b / spoplb
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 33818179
Gene end: 33842715
  
Corresponding Affymetrix probe sets: Dr.16512.1.A1_at (Zebrafish Array)   Dr.19711.1.S1_at (Zebrafish Array)   NM_001079969_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000103804
NCBI entrez gene - 558170     See in Manteia.
RefSeq - NM_001079969
RefSeq Peptide - NP_001073438
swissprot - A0JMG1
ZFIN ID - ZDB-GENE-061103-277
Ensembl - ENSDARG00000003974
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5BL35 / spoplb / spopla / speckle-type POZ protein-like a / SPOPL* / Q2M2N2* / Q6IQ16* / Speckle-type POZ protein-like * / speckle type BTB/POZ protein like*ENSDARG0000001056395
spop / Q7T330 / speckle-type POZ protein / Gm5773* / Gm9117* / Gm9125* / O43791* / P0DMR5* / P0DMR6* / Tdpoz5* / Gm4778* / Gm4858* / Gm5286* / Q6YCH2* / Q6ZWS8* / Q717B2* / Q717B4* / Tdpoz1...ENSDARG0000010051980
si:dkey-260j18.2ENSDARG0000010194213
kbtbd4 / kelch repeat and BTB (POZ) domain containing 4 / Q9NVX7* / Q8R179* / kelch repeat and BTB domain containing 4* / Kelch repeat and BTB domain-containing protein 4 *ENSDARG0000006927112


Protein motifs (from Interpro)
Interpro ID Name
 IPR000210  BTB/POZ domain
 IPR002083  MATH/TRAF domain
 IPR008974  TRAF-like
 IPR011333  SKP1/BTB/POZ domain superfamily
 IPR034089  SPOP, C-terminal BACK-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030162 regulation of proteolysis IBA
 biological_processGO:0031397 negative regulation of protein ubiquitination ISS
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0019005 SCF ubiquitin ligase complex IBA
 cellular_componentGO:0031463 Cul3-RING ubiquitin ligase complex ISS
 molecular_functionGO:0031625 ubiquitin protein ligase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr