ENSDARG00000004307


Danio rerio

Features
Gene ID: ENSDARG00000004307
  
Biological name :lypd6
  
Synonyms : LY6/PLAUR domain containing 6 / lypd6 / Q66IA6
  
Possible biological names infered from orthology : Ly6/PLAUR domain-containing protein 6 / Q86Y78 / Q8BPP5
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 23071149
Gene end: 23118350
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000013064
NCBI entrez gene - 447932     See in Manteia.
swissprot - Q66IA6
ZFIN ID - ZDB-GENE-040912-117
Ensembl - ENSDARG00000004307
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LYPD6ENSGALG00000012470Gallus gallus
 LYPD6ENSG00000187123Homo sapiens
 Lypd6ENSMUSG00000050447Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lypd6b / LY6/PLAUR domain containing 6B / Q8NI32* / Q9D7F2* / Ly6/PLAUR domain-containing protein 6B *ENSDARG0000007764331


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0060061 Spemann organizer formation IMP
 biological_processGO:0060827 regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation IMP
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IGI
 biological_processGO:2000053 regulation of Wnt signaling pathway involved in dorsal/ventral axis specification IMP
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0046658 anchored component of plasma membrane IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
eye aplastic , abnormal
Show

 ZFA:0001058 caudal fin caudal fin decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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