ENSDARG00000004774


Danio rerio

Features
Gene ID: ENSDARG00000004774
  
Biological name :wdr36
  
Synonyms : wdr36 / WD repeat domain 36
  
Possible biological names infered from orthology : Q8NI36
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 55866769
Gene end: 55914268
  
Corresponding Affymetrix probe sets: Dr.4799.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000008668
NCBI entrez gene - 321745     See in Manteia.
RefSeq - NM_001308831
RefSeq Peptide - NP_001295760
swissprot - A3KPR1
ZFIN ID - ZDB-GENE-030131-464
Ensembl - ENSDARG00000004774
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WDR36ENSGALG00000000247Gallus gallus
 WDR36ENSG00000134987Homo sapiens
 Wdr36ENSMUSG00000038299Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR007319  Small-subunit processome, Utp21
 IPR011047  Quinoprotein alcohol dehydrogenase-like superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IMP
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0034388 Pwp2p-containing subcomplex of 90S preribosome IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000035 lens lens degenerate , abnormal
lens opacity , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver necrotic , abnormal
liver nucleolus morphology , abnormal
liver nucleolus increased size , abnormal
liver quality , abnormal
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 ZFA:0000152 retina retina cellular quality , abnormal
retina degenerate , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001289 ciliary marginal zone ciliary marginal zone nucleolus morphology , abnormal
ciliary marginal zone nucleolus increased size , abnormal
ciliary marginal zone decreased size , abnormal
Show

 ZFA:0001326 lens epithelium lens epithelium increased thickness , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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 ZFA:0009310 retinal ganglion cell retinal ganglion cell nucleolus morphology , abnormal
retinal ganglion cell nucleolus increased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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