ENSDARG00000005382


Danio rerio

Features
Gene ID: ENSDARG00000005382
  
Biological name :prdm9
  
Synonyms : prdm9 / PR domain containing 9 / Q6P2A1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 9781524
Gene end: 9796237
  
Corresponding Affymetrix probe sets: Dr.18500.1.A1_at (Zebrafish Array)   NM_200902_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000026323
Ensembl peptide - ENSDARP00000123833
NCBI entrez gene - 393876     See in Manteia.
RefSeq - NM_200902
RefSeq Peptide - NP_957196
swissprot - F8W4Z5
swissprot - Q6P2A1
ZFIN ID - ZDB-GENE-040426-1319
Ensembl - ENSDARG00000005382
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prdm2b / PR domain containing 2, with ZNF domain b / PRDM2* / Q13029* / PR/SET domain 2* / PR domain containing 2, with ZNF domain*ENSDARG0000007645111
prdm2a / PR domain containing 2, with ZNF domain a / PRDM2* / Q13029* / PR/SET domain 2* / PR domain containing 2, with ZNF domain*ENSDARG0000009072111


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0034968 histone lysine methylation IEA
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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