ENSDARG00000005791


Danio rerio

Features
Gene ID: ENSDARG00000005791
  
Biological name :rpl28
  
Synonyms : ribosomal protein L28 / rpl28
  
Possible biological names infered from orthology : P41105 / P46779
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 51883725
Gene end: 51889734
  
Corresponding Affymetrix probe sets: Dr.1338.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000024189
Ensembl peptide - ENSDARP00000144405
Ensembl peptide - ENSDARP00000145056
NCBI entrez gene - 394036     See in Manteia.
swissprot - F1QFV6
ZFIN ID - ZDB-GENE-040930-10
Ensembl - ENSDARG00000005791
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL28ENSG00000108107Homo sapiens
 Rpl28ENSMUSG00000030432Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002672  Ribosomal protein L28e
 IPR029004  Ribosomal L28e/Mak16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 biological_processGO:0043009 chordate embryonic development IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball increased size , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary deformed , abnormal
midbrain hindbrain boundary condensed , abnormal
midbrain hindbrain boundary quality , abnormal
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 ZFA:0000079 telencephalon telencephalon deformed , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
yolk quality , abnormal
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 ZFA:0000100 cerebellum cerebellum aplastic , abnormal
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 ZFA:0000106 extension extension decreased length , abnormal
extension deformed , abnormal
extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000108 fin fin deformed , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle increased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000138 otic placode otic placode decreased size , abnormal
otic placode aplastic , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0000445 optic tectum optic tectum increased size , abnormal
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 ZFA:0000559 otolith organ otolith organ decreased size , abnormal
otolith organ deformed , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001114 head head protruding , abnormal
head decreased size , abnormal
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 ZFA:0001117 post-vent region post-vent region bent , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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