ENSG00000108107


Homo sapiens

Features
Gene ID: ENSG00000108107
  
Biological name :RPL28
  
Synonyms : P46779 / ribosomal protein L28 / RPL28
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.42
Gene start: 55385345
Gene end: 55403250
  
Corresponding Affymetrix probe sets: 200003_s_at (Human Genome U133 Plus 2.0 Array)   213223_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453584
Ensembl peptide - ENSP00000342787
Ensembl peptide - ENSP00000391665
Ensembl peptide - ENSP00000453285
Ensembl peptide - ENSP00000453319
Ensembl peptide - ENSP00000400596
Ensembl peptide - ENSP00000452763
Ensembl peptide - ENSP00000452909
Ensembl peptide - ENSP00000453029
NCBI entrez gene - 6158     See in Manteia.
OMIM - 603638
RefSeq - NM_001136134
RefSeq - NM_001136136
RefSeq - NM_001136137
RefSeq - NM_000991
RefSeq - NM_001136135
RefSeq Peptide - NP_001129606
RefSeq Peptide - NP_001129608
RefSeq Peptide - NP_001129609
RefSeq Peptide - NP_000982
RefSeq Peptide - NP_001129607
swissprot - P46779
swissprot - H0YKD8
swissprot - H0YLP6
swissprot - H0YMF4
Ensembl - ENSG00000108107
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl28ENSDARG00000005791Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002672  Ribosomal protein L28e
 IPR029004  Ribosomal L28e/Mak16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0019083 viral transcription TAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit TAS
 cellular_componentGO:0030425 dendrite IDA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 cellular_componentGO:0044297 cell body IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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