ENSDARG00000006110


Danio rerio

Features
Gene ID: ENSDARG00000006110
  
Biological name :chrd
  
Synonyms : chordin / chrd
  
Possible biological names infered from orthology : Mus musculus chordin (Chrd), transcript variant 3, mRNA. / Q9H2X0 / Q9Z0E2
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 46790676
Gene end: 46828958
  
Corresponding Affymetrix probe sets: Dr.13384.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000045109
Ensembl peptide - ENSDARP00000124241
NCBI entrez gene - 30161     See in Manteia.
swissprot - F1QKY4
swissprot - F8W4C2
ZFIN ID - ZDB-GENE-990415-33
Ensembl - ENSDARG00000006110
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHRDENSGALG00000026983Gallus gallus
 CHRDENSG00000090539Homo sapiens
 ChrdENSMUSG00000006958Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chrdl2 / chordin-like 2 / Q6WN34*ENSDARG000000789169


Protein motifs (from Interpro)
Interpro ID Name
 IPR001007  VWFC domain
 IPR010895  CHRD
 IPR016353  Chordin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle dislocated yolk , abnormal
Kupffers vesicle decreased size , abnormal
Kupffers vesicle bilateral , abnormal
Kupffers vesicle inverted , abnormal
Show

 ZFA:0000008 brain brain quality , abnormal
brain anterior region decreased size , abnormal
Show

 ZFA:0000023 forerunner cell group forerunner cell group decreased size , abnormal
Show

 ZFA:0000033 intermediate cell mass of mesoderm intermediate cell mass of mesoderm increased size , abnormal
Show

 ZFA:0000040 median fin fold median fin fold duplicated , abnormal
median fin fold increased amount , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle decreased amount , abnormal
otic vesicle decreased size , abnormal
Show

 ZFA:0000072 somite 1 somite 1 decreased size , abnormal
Show

 ZFA:0000073 somite 5 somite 5 decreased size , abnormal
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 ZFA:0000077 tail bud tail bud increased size , abnormal
tail bud increased thickness , abnormal
tail bud increased width , abnormal
tail bud wholly anterioralized , abnormal
tail bud shape , abnormal
tail bud increased length , abnormal
tail bud everted , abnormal
Show

 ZFA:0000094 blood island blood island increased amount , abnormal
blood island increased width , abnormal
blood island size , abnormal
Show

 ZFA:0000106 extension extension increased size , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000108 fin fin decreased size , abnormal
Show

 ZFA:0000109 forebrain forebrain decreased size , abnormal
Show

 ZFA:0000121 lateral plate mesoderm lateral plate mesoderm increased width , abnormal
Show

 ZFA:0000132 neural plate neural plate decreased length , abnormal
neural plate decreased thickness , abnormal
Show

 ZFA:0000135 notochord notochord aplastic , abnormal
notochord morphology , abnormal
notochord truncated , abnormal
notochord decreased width , abnormal
Show

 ZFA:0000149 primitive heart tube primitive heart tube bilateral , abnormal
primitive heart tube inverted , abnormal
Show

 ZFA:0000151 pronephros pronephros ventral region increased width , abnormal
Show

 ZFA:0000155 somite somite decreased amount , abnormal
somite aplastic , abnormal
somite U-shaped , abnormal
Show

 ZFA:0000180 caudal vein caudal vein truncated , abnormal
Show

 ZFA:0000282 sensory system sensory system quality , abnormal
Show

 ZFA:0000292 surface structure surface structure quality , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0000671 horizontal myoseptum horizontal myoseptum hypoplastic , abnormal
Show

 ZFA:0000725 somite 11 somite 11 increased size , abnormal
somite 11 dorso-medial margin fused with somite 11 dorso-medial margin, abnormal
Show

 ZFA:0000726 somite 14 somite 14 increased size , abnormal
somite 14 dorso-medial margin fused with somite 14 dorso-medial margin, abnormal
Show

 ZFA:0000728 somite 2 somite 2 decreased size , abnormal
Show

 ZFA:0000732 somite 3 somite 3 decreased size , abnormal
Show

 ZFA:0000851 somite 12 somite 12 increased size , abnormal
somite 12 dorso-medial margin fused with somite 12 dorso-medial margin, abnormal
Show

 ZFA:0000852 somite 15 somite 15 increased size , abnormal
somite 15 dorso-medial margin fused with somite 15 dorso-medial margin, abnormal
Show

 ZFA:0000857 somite 4 somite 4 decreased size , abnormal
Show

 ZFA:0000975 somite 13 somite 13 increased size , abnormal
somite 13 dorso-medial margin fused with somite 13 dorso-medial margin, abnormal
Show

 ZFA:0001058 caudal fin caudal fin duplicated , abnormal
caudal fin increased amount , abnormal
caudal fin multiple , abnormal
caudal fin structure , abnormal
Show

 ZFA:0001065 lateral mesoderm lateral mesoderm mislocalised , abnormal
Show

 ZFA:0001069 ventral fin fold ventral fin fold multiple , abnormal
ventral fin fold increased size , abnormal
ventral fin fold duplicated , abnormal
Show

 ZFA:0001094 whole organism whole organism wholly ventralized , abnormal
whole organism shape , abnormal
whole organism lethal (sensu genetics) , abnormal
whole organism wholly dorsalized , abnormal
whole organism elongated , abnormal
Show

 ZFA:0001114 head head truncated , abnormal
head decreased size , abnormal
head decreased thickness , abnormal
head morphology , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
trunk ventral region increased thickness , abnormal
trunk somite decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region quality , abnormal
post-vent region increased size , abnormal
post-vent region curved dorsal , abnormal
post-vent region curved , abnormal
post-vent region increased thickness , abnormal
post-vent region somite increased size , abnormal
post-vent region somite decreased size , abnormal
post-vent region morphology , abnormal
post-vent region truncated , abnormal
post-vent region folded , abnormal
post-vent region apoptotic , abnormal
post-vent region wholly ventralized , abnormal
post-vent region bent , abnormal
Show

 ZFA:0001135 neural tube neural tube decreased size , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin decreased size , abnormal
Show

 ZFA:0001201 ventral lateral mesoderm ventral lateral mesoderm wholly dorsalized , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton morphology , abnormal
Show

 ZFA:0001670 notochord posterior region notochord posterior region has fewer parts of type cell , abnormal
Show

 ZFA:0005023 hematopoietic system hematopoietic system increased size , abnormal
Show

 ZFA:0005040 posterior lateral mesoderm posterior lateral mesoderm morphology , abnormal
Show

 ZFA:0009044 blood cell blood cell increased amount , abnormal
Show

 ZFA:0009102 pancreatic B cell pancreatic B cell increased amount , abnormal
pancreatic B cell decreased amount , abnormal
Show

 ZFA:0009288 primordial germ cell primordial germ cell mislocalised , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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