ENSDARG00000006413


Danio rerio

Features
Gene ID: ENSDARG00000006413
  
Biological name :rpl38
  
Synonyms : ribosomal protein L38 / rpl38
  
Possible biological names infered from orthology : P63173
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 38556462
Gene end: 38561842
  
Corresponding Affymetrix probe sets: Dr.24921.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000005837
Ensembl peptide - ENSDARP00000112691
NCBI entrez gene - 436759     See in Manteia.
swissprot - Q6DGL9
ZFIN ID - ZDB-GENE-030131-8752
Ensembl - ENSDARG00000006413
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL38ENSG00000172809Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LO018128.1 / RPL38* / P63173* / ribosomal protein L38*ENSDARG0000011104083


Protein motifs (from Interpro)
Interpro ID Name
 IPR002675  Ribosomal protein L38e


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 biological_processGO:0022618 ribonucleoprotein complex assembly IBA
 biological_processGO:0043009 chordate embryonic development IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000035 lens lens decreased size , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary aplastic , abnormal
Show

 ZFA:0000079 telencephalon telencephalon deformed , abnormal
Show

 ZFA:0000100 cerebellum cerebellum decreased thickness , abnormal
Show

 ZFA:0000106 extension extension decreased length , abnormal
extension decreased thickness , abnormal
Show

 ZFA:0000108 fin fin deformed , abnormal
Show

 ZFA:0000109 forebrain forebrain protruding , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle increased size , abnormal
fourth ventricle opaque , abnormal
Show

 ZFA:0000138 otic placode otic placode decreased size , abnormal
otic placode aplastic , abnormal
Show

 ZFA:0000152 retina retina decreased size , abnormal
Show

 ZFA:0000160 tegmentum tegmentum opaque , abnormal
Show

 ZFA:0000445 optic tectum optic tectum opaque , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr