ENSG00000172809


Homo sapiens

Features
Gene ID: ENSG00000172809
  
Biological name :RPL38
  
Synonyms : P63173 / ribosomal protein L38 / RPL38
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q25.1
Gene start: 74203582
Gene end: 74210655
  
Corresponding Affymetrix probe sets: 202029_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000309830
Ensembl peptide - ENSP00000462580
Ensembl peptide - ENSP00000463312
Ensembl peptide - ENSP00000462837
Ensembl peptide - ENSP00000390279
Ensembl peptide - ENSP00000434243
NCBI entrez gene - 6169     See in Manteia.
OMIM - 604182
RefSeq - NM_001035258
RefSeq - NM_000999
RefSeq Peptide - NP_000990
RefSeq Peptide - NP_001030335
swissprot - A0A024R8P8
swissprot - P63173
swissprot - J3KSP2
swissprot - J3KT73
swissprot - J3QL01
Ensembl - ENSG00000172809
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LO018128.1ENSDARG00000111040Danio rerio
 rpl38ENSDARG00000006413Danio rerio
 RPL38ENSGALG00000001465Gallus gallus
 Rpl38ENSMUSG00000057322Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002675  Ribosomal protein L38e


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0002181 cytoplasmic translation IDA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IBA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0019083 viral transcription TAS
 biological_processGO:0022618 ribonucleoprotein complex assembly IBA
 biological_processGO:0034463 90S preribosome assembly IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0048318 axial mesoderm development IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit TAS
 cellular_componentGO:0033291 eukaryotic 80S initiation complex IEA
 cellular_componentGO:0042788 polysomal ribosome IDA
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0003735 structural constituent of ribosome TAS


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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