ENSGALG00000001465


Gallus gallus

Features
Gene ID: ENSGALG00000001465
  
Biological name :RPL38
  
Synonyms : ribosomal protein L38 / RPL38
  
Possible biological names infered from orthology : P63173 / Q9JJI8
  
Species: Gallus gallus
  
Chr. number: 18
Strand: 1
Band:
Gene start: 9191872
Gene end: 9194395
  
Corresponding Affymetrix probe sets: Gga.12268.1.S1_at (Chicken Array)   Gga.6224.1.S1_a_at (Chicken Array)   Gga.6224.1.S1_s_at (Chicken Array)   Gga.6224.2.S1_x_at (Chicken Array)   Gga.6446.1.S1_x_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002218
Ensembl peptide - ENSGALP00000044210
NCBI entrez gene - 771528     See in Manteia.
RefSeq - NM_001278012
RefSeq Peptide - NP_001264941
swissprot - E1BU66
swissprot - A0A1D5NV37
Ensembl - ENSGALG00000001465
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LO018128.1ENSDARG00000111040Danio rerio
 RPL38ENSG00000172809Homo sapiens
 Rpl38ENSMUSG00000057322Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002675  Ribosomal protein L38e


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0002181 cytoplasmic translation IEA
 biological_processGO:0006412 translation IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0022618 ribonucleoprotein complex assembly IBA
 biological_processGO:0034463 90S preribosome assembly IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0048318 axial mesoderm development IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IEA
 cellular_componentGO:0033291 eukaryotic 80S initiation complex IEA
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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