ENSDARG00000007092


Danio rerio

Features
Gene ID: ENSDARG00000007092
  
Biological name :xab2
  
Synonyms : xab2 / XPA binding protein 2
  
Possible biological names infered from orthology : Q9DCD2 / Q9HCS7
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 53317040
Gene end: 53350547
  
Corresponding Affymetrix probe sets: Dr.12501.1.A1_at (Zebrafish Array)   NM_001044783_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000010070
NCBI entrez gene - 387600     See in Manteia.
RefSeq - NM_001044783
RefSeq Peptide - NP_001038248
swissprot - Q1LY92
ZFIN ID - ZDB-GENE-040426-685
Ensembl - ENSDARG00000007092
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 XAB2ENSG00000076924Homo sapiens
 Xab2ENSMUSG00000019470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000349 generation of catalytic spliceosome for first transesterification step IBA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071012 catalytic step 1 spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA


Pathways (from Reactome)
Pathway description
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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