ENSDARG00000007130


Danio rerio

Features
Gene ID: ENSDARG00000007130
  
Biological name :mrto4
  
Synonyms : MRT4 homolog, ribosome maturation factor / mrto4
  
Possible biological names infered from orthology : Mus musculus mRNA turnover 4, ribosome maturation factor (Mrto4), transcript variant 3, mRNA. / Q9D0I8 / Q9UKD2
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 41846059
Gene end: 41853874
  
Corresponding Affymetrix probe sets: Dr.4274.2.A1_at (Zebrafish Array)   NM_001017657_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000002982
NCBI entrez gene - 550350     See in Manteia.
RefSeq - NM_001017657
RefSeq Peptide - NP_001017657
swissprot - F1QTS9
ZFIN ID - ZDB-GENE-050417-142
Ensembl - ENSDARG00000007130
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MRTO4ENSGALG00000003991Gallus gallus
 MRTO4ENSG00000053372Homo sapiens
 Mrto4ENSMUSG00000028741Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001790  Ribosomal protein L10P
 IPR033867  Ribosome assembly factor Mrt4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IBA
 biological_processGO:0006364 rRNA processing IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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