ENSDARG00000007315


Danio rerio

Features
Gene ID: ENSDARG00000007315
  
Biological name :tmpoa
  
Synonyms : thymopoietin a / tmpoa
  
Possible biological names infered from orthology : P42166 / P42167 / Q61029 / Q61033 / thymopoietin / TMPO
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 16857722
Gene end: 16876336
  
Corresponding Affymetrix probe sets: Dr.10531.1.S1_a_at (Zebrafish Array)   Dr.10531.3.S1_a_at (Zebrafish Array)   NM_180968_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000021537
Ensembl peptide - ENSDARP00000042873
Ensembl peptide - ENSDARP00000044004
Ensembl peptide - ENSDARP00000108241
Ensembl peptide - ENSDARP00000147840
NCBI entrez gene - 352907     See in Manteia.
RefSeq - NM_001328563
RefSeq - NM_001328564
RefSeq - NM_001328565
RefSeq - XM_005164722
RefSeq - NM_180968
RefSeq Peptide - NP_001315492
RefSeq Peptide - NP_001315493
RefSeq Peptide - NP_001315494
RefSeq Peptide - NP_851299
swissprot - Q5RGX4
swissprot - Q5RGX5
swissprot - Q7ZTV0
swissprot - Q5RGX2
ZFIN ID - ZDB-GENE-030131-6003
Ensembl - ENSDARG00000007315
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMPOENSGALG00000011504Gallus gallus
 TMPOENSG00000120802Homo sapiens
 TmpoENSMUSG00000019961Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tmpob / thymopoietin b / TMPO* / P42166* / Q61029* / Q61033* / P42167* / thymopoietin*ENSDARG0000002297824
zgc:92287ENSDARG0000004016112


Protein motifs (from Interpro)
Interpro ID Name
 IPR003887  LEM domain
 IPR011015  LEM/LEM-like domain superfamily
 IPR013146  LEM-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007084 mitotic nuclear envelope reassembly IDA
 cellular_componentGO:0000793 condensed chromosome IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IDA
 cellular_componentGO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr