ENSDARG00000009549


Danio rerio

Features
Gene ID: ENSDARG00000009549
  
Biological name :ubr4
  
Synonyms : ubiquitin protein ligase E3 component n-recognin 4 / ubr4
  
Possible biological names infered from orthology : A2AN08 / Q5T4S7
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 21278948
Gene end: 21376847
  
Corresponding Affymetrix probe sets: Dr.19201.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000034465
Ensembl peptide - ENSDARP00000128666
NCBI entrez gene - 407625     See in Manteia.
RefSeq - XM_009296887
RefSeq - XM_017353683
RefSeq - XM_021473654
RefSeq - XM_021473658
swissprot - X1WEL5
swissprot - F1R984
ZFIN ID - ZDB-GENE-090313-341
Ensembl - ENSDARG00000009549
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UBR4ENSGALG00000030563Gallus gallus
 UBR4ENSG00000127481Homo sapiens
 Ubr4ENSMUSG00000066036Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003126  Zinc finger, UBR-type
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR017986  WD40-repeat-containing domain
 IPR025704  E3 ubiquitin ligase, UBR4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr