ENSDARG00000010516


Danio rerio

Features
Gene ID: ENSDARG00000010516
  
Biological name :rpl21
  
Synonyms : ribosomal protein L21 / rpl21
  
Possible biological names infered from orthology : P46778
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 21621654
Gene end: 21627293
  
Corresponding Affymetrix probe sets: Dr.24411.1.A1_at (Zebrafish Array)   Dr.643.1.S1_at (Zebrafish Array)   NM_001002155_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000016158
Ensembl peptide - ENSDARP00000149221
NCBI entrez gene - 336568     See in Manteia.
RefSeq - NM_001002155
RefSeq Peptide - NP_001002155
swissprot - Q6IQQ0
ZFIN ID - ZDB-GENE-030131-8512
Ensembl - ENSDARG00000010516
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL21ENSGALG00000027035Gallus gallus
 RPL21ENSG00000122026Homo sapiens
 Rpl21ENSMUSG00000041453Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AL929009.2ENSDARG0000011314817


Protein motifs (from Interpro)
Interpro ID Name
 IPR001147  Ribosomal protein L21e
 IPR008991  Translation protein SH3-like domain superfamily
 IPR018259  Ribosomal protein L21e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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