ENSDARG00000011594


Danio rerio

Features
Gene ID: ENSDARG00000011594
  
Biological name :smarcb1b
  
Synonyms : smarcb1b / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b
  
Possible biological names infered from orthology : Q12824 / Q9Z0H3 / SMARCB1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 15592426
Gene end: 15621361
  
Corresponding Affymetrix probe sets: Dr.3884.1.S1_at (Zebrafish Array)   NM_131448_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123574
Ensembl peptide - ENSDARP00000157418
Ensembl peptide - ENSDARP00000116163
Ensembl peptide - ENSDARP00000118881
NCBI entrez gene - 30731     See in Manteia.
RefSeq - NM_131448
RefSeq Peptide - NP_571523
swissprot - E9QBQ8
swissprot - F1Q9N1
swissprot - F1R4U9
ZFIN ID - ZDB-GENE-991008-16
Ensembl - ENSDARG00000011594
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5ZK40ENSGALG00000005983Gallus gallus
 Q12824ENSG00000099956Homo sapiens
 Q9Z0H3ENSMUSG00000000902Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5U379 / smarcb1a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a / Q9Z0H3* / Q12824* / SMARCB1* / SWI/SNF related, matrix associated, a...ENSDARG0000003364796


Protein motifs (from Interpro)
Interpro ID Name
 IPR006939  SNF5/SMARCB1/INI1
 IPR017393  Chromatin-remodeling complex component Sfh1/SNF5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 cellular_componentGO:0000228 nuclear chromosome IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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