ENSGALG00000005983


Gallus gallus

Features
Gene ID: ENSGALG00000005983
  
Biological name :SMARCB1
  
Synonyms : Q5ZK40 / SMARCB1 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
  
Possible biological names infered from orthology : Q12824 / Q9Z0H3
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 8043151
Gene end: 8053132
  
Corresponding Affymetrix probe sets: Gga.4349.1.S1_s_at (Chicken Array)   Gga.4349.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009608
NCBI entrez gene - 769489     See in Manteia.
RefSeq - NM_001039255
RefSeq Peptide - NP_001034344
swissprot - Q5ZK40
Ensembl - ENSGALG00000005983
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5U379ENSDARG00000033647Danio rerio
 smarcb1bENSDARG00000011594Danio rerio
 Q12824ENSG00000099956Homo sapiens
 Q9Z0H3ENSMUSG00000000902Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006939  SNF5/SMARCB1/INI1
 IPR017393  Chromatin-remodeling complex component Sfh1/SNF5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001824 blastocyst development IEA
 biological_processGO:0001835 blastocyst hatching IEA
 biological_processGO:0006281 DNA repair IBA
 biological_processGO:0006337 nucleosome disassembly IBA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IBA
 cellular_componentGO:0000228 nuclear chromosome IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0001741 XY body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003677 DNA binding ISS


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000016022 RUNX1 / runt related transcription factor 1 / Q01196*  / complex / reaction
 ENSGALG00000010164 SMARCA2 / probable global transcription activator SNF2L2 / P51531* / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2*  / complex






 

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