ENSDARG00000012039


Danio rerio

Features
Gene ID: ENSDARG00000012039
  
Biological name :ttc26
  
Synonyms : Q5PR66 / tetratricopeptide repeat domain 26 / ttc26
  
Possible biological names infered from orthology : A0AVF1 / Q8BS45
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 7688491
Gene end: 7711349
  
Corresponding Affymetrix probe sets: Dr.14525.1.A1_at (Zebrafish Array)   NM_001008617_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000032176
NCBI entrez gene - 494074     See in Manteia.
RefSeq - NM_001008617
RefSeq Peptide - NP_001008617
swissprot - Q5PR66
ZFIN ID - ZDB-GENE-041212-41
Ensembl - ENSDARG00000012039
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TTC26ENSGALG00000011847Gallus gallus
 TTC26ENSG00000105948Homo sapiens
 Ttc26ENSMUSG00000056832Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat
 IPR030511  Tetratricopeptide repeat protein 26


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007224 smoothened signaling pathway ISS
 biological_processGO:0008594 photoreceptor cell morphogenesis IDA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0035845 photoreceptor cell outer segment organization IMP
 biological_processGO:0039023 pronephric duct morphogenesis IMP
 biological_processGO:0042073 intraciliary transport IMP
 biological_processGO:0046530 photoreceptor cell differentiation IDA
 biological_processGO:0060271 cilium assembly IDA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0030992 intraciliary transport particle B ISS
 cellular_componentGO:0042995 cell projection IEA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium movement decreased frequency , abnormal
Kupffers vesicle cilium movement process quality , abnormal
Kupffers vesicle cilium decreased length , abnormal
Kupffers vesicle cilium decreased amount , abnormal
Show

 ZFA:0000150 pronephric duct pronephric duct increased size , abnormal
pronephric duct cilium decreased length , abnormal
Show

 ZFA:0000151 pronephros pronephros cilium disoriented , abnormal
pronephros cilium disorganized , abnormal
pronephros cilium shortened , abnormal
Show

 ZFA:0001094 whole organism whole organism curved , abnormal
whole organism decreased length , abnormal
Show

 ZFA:0001115 trunk trunk edematous , abnormal
Show

 ZFA:0001117 post-vent region post-vent region kinked , abnormal
Show

 ZFA:0001466 photoreceptor outer segment layer photoreceptor outer segment layer disorganized , abnormal
photoreceptor outer segment layer shortened , abnormal
Show

 ZFA:0001558 pronephric tubule pronephric tubule dilated , abnormal
pronephric tubule distended , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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