ENSDARG00000012261
Danio rerio | |
Features
| Gene ID: | ENSDARG00000012261 | | | | | Biological name : | eftud2 | | | | | Synonyms : | eftud2 / elongation factor Tu GTP binding domain containing 2 | | | | | Possible biological names infered from orthology : | 116 kDa U5 small nuclear ribonucleoprotein component / O08810 / Q15029 | | | | | Species: | Danio rerio | | | | | Chr. number: | 3 | | Strand: | -1 | | Band: | | | Gene start: | 16389020 | | Gene end: | 16413635 | | | | | Corresponding Affymetrix probe sets: | Dr.2332.1.S1_at (Zebrafish Array) | | | | | Cross references: | Ensembl peptide - ENSDARP00000028033
Ensembl peptide - ENSDARP00000115252
Ensembl peptide - ENSDARP00000114493
Ensembl peptide - ENSDARP00000112204
NCBI entrez gene - 393480
See in Manteia.
RefSeq - NM_200508
RefSeq Peptide - NP_956802
swissprot - E7FGW2
swissprot - E9QH15
swissprot - F1Q6N0
swissprot - E9QFC1
ZFIN ID - ZDB-GENE-040426-1569
Ensembl - ENSDARG00000012261
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
No match
Protein motifs (from Interpro)
| IPR000640 | Elongation factor EFG, domain V-like | | IPR000795 | Transcription factor, GTP-binding domain | | IPR004161 | Translation elongation factor EFTu-like, domain 2 | | IPR005225 | Small GTP-binding protein domain | | IPR005517 | Translation elongation factor EFG/EF2, domain IV | | IPR009000 | Translation protein, beta-barrel domain superfamily | | IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup | | IPR020568 | Ribosomal protein S5 domain 2-type fold | | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | | IPR031950 | 116kDa U5 small nuclear ribonucleoprotein component, N-terminal | | IPR035647 | EF-G domain III/V-like | | IPR035655 | 116kDa U5 small nuclear ribonucleoprotein component, C-terminal |
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000008 | brain | brain apoptotic process increased occurrence , abnormal
brain morphology , abnormal
brain cell proliferation increased occurrence , abnormal
brain neuron decreased amount , abnormal |
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| | ZFA:0000012 | central nervous system | central nervous system apoptotic process increased occurrence , abnormal |
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| | ZFA:0000037 | anatomical structure | anatomical structure absent , abnormal
anatomical structure increased amount , abnormal |
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| | ZFA:0000075 | spinal cord | spinal cord apoptotic process increased occurrence , abnormal
spinal cord cell proliferation increased occurrence , abnormal
spinal cord glial cell deformed , abnormal
spinal cord neuroblast (sensu Vertebrata) deformed , abnormal |
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| | ZFA:0000107 | eye | eye decreased diameter , abnormal
eye perforate , abnormal
eye decreased size , abnormal |
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| | ZFA:0000152 | retina | retina cell death increased occurrence , abnormal
retina ventral region decreased thickness , abnormal
retina apoptotic process increased occurrence , abnormal |
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| | ZFA:0000445 | optic tectum | optic tectum apoptotic process increased occurrence , abnormal |
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| | ZFA:0001058 | caudal fin | caudal fin curved dorsal , abnormal |
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| | ZFA:0001094 | whole organism | whole organism apoptotic process increased occurrence , abnormal
whole organism anterior-posterior axis decreased length , abnormal
whole organism dead , abnormal |
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| | ZFA:0001114 | head | head decreased size , abnormal
head dorsal-ventral axis decreased height , abnormal
head apoptotic , abnormal |
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| | ZFA:0001284 | optic fissure | optic fissure closure incomplete , abnormal |
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| | ZFA:0001306 | pharyngeal arch | pharyngeal arch apoptotic process increased occurrence , abnormal |
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| | ZFA:0009168 | neuroblast (sensu Vertebrata) | neuroblast (sensu Vertebrata) apoptotic process increased occurrence , abnormal |
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Interacting proteins (from Reactome)
No match
0 s.
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