ENSGALG00000000988


Gallus gallus

Features
Gene ID: ENSGALG00000000988
  
Biological name :EFTUD2
  
Synonyms : 116 kDa U5 small nuclear ribonucleoprotein component / EFTUD2 / Q5F3X4
  
Possible biological names infered from orthology : elongation factor Tu GTP binding domain containing 2 / O08810 / Q15029
  
Species: Gallus gallus
  
Chr. number: 27
Strand: -1
Band:
Gene start: 1442516
Gene end: 1458168
  
Corresponding Affymetrix probe sets: GgaAffx.21049.1.S1_at (Chicken Array)   GgaAffx.22749.1.S1_at (Chicken Array)   GgaAffx.22749.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001456
Ensembl peptide - ENSGALP00000064066
Ensembl peptide - ENSGALP00000063711
NCBI entrez gene - 428281     See in Manteia.
RefSeq - NM_001031501
RefSeq Peptide - NP_001026672
swissprot - A0A1L1RYY6
swissprot - A0A1L1RXY9
swissprot - Q5F3X4
Ensembl - ENSGALG00000000988
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 eftud2ENSDARG00000012261Danio rerio
 EFTUD2ENSG00000108883Homo sapiens
 Eftud2ENSMUSG00000020929Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000640  Elongation factor EFG, domain V-like
 IPR000795  Transcription factor, GTP-binding domain
 IPR004161  Translation elongation factor EFTu-like, domain 2
 IPR005225  Small GTP-binding protein domain
 IPR005517  Translation elongation factor EFG/EF2, domain IV
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR009022  Elongation factor G, domain III
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031950  116kDa U5 small nuclear ribonucleoprotein component, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr