ENSDARG00000012899


Danio rerio

Features
Gene ID: ENSDARG00000012899
  
Biological name :ddx49
  
Synonyms : ddx49 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
  
Possible biological names infered from orthology : DEAD-box helicase 49 / Probable ATP-dependent RNA helicase DDX49 / Q4FZF3 / Q9Y6V7
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 6869312
Gene end: 6880725
  
Corresponding Affymetrix probe sets: Dr.4017.1.S1_at (Zebrafish Array)   NM_198365_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000135202
Ensembl peptide - ENSDARP00000015246
NCBI entrez gene - 386632     See in Manteia.
RefSeq - NM_198365
RefSeq Peptide - NP_938179
swissprot - A0A0R4IJX7
swissprot - Q5RGB7
ZFIN ID - ZDB-GENE-031030-3
Ensembl - ENSDARG00000012899
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX49ENSGALG00000003130Gallus gallus
 DDX49ENSG00000105671Homo sapiens
 Ddx49ENSMUSG00000057788Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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