ENSDARG00000015471


Danio rerio

Features
Gene ID: ENSDARG00000015471
  
Biological name :chd1l
  
Synonyms : chd1l / chromodomain helicase DNA binding protein 1-like
  
Possible biological names infered from orthology : Q86WJ1 / Q9CXF7
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 36844127
Gene end: 36877587
  
Corresponding Affymetrix probe sets: Dr.24974.1.S1_at (Zebrafish Array)   NM_200313_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000022305
NCBI entrez gene - 393283     See in Manteia.
RefSeq - NM_200313
RefSeq Peptide - NP_956607
swissprot - F1R485
ZFIN ID - ZDB-GENE-040426-892
Ensembl - ENSDARG00000015471
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHD1LENSGALG00000015038Gallus gallus
 CHD1LENSG00000131778Homo sapiens
 Chd1lENSMUSG00000028089Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarca1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 / P28370* / Q6PGB8* / Mus musculus SWI/SNF related, matrix associated, actin depe...ENSDARG0000001277627
smarca5 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5ENSDARG0000005234827


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001357  BRCT domain
 IPR001650  Helicase, C-terminal
 IPR002589  Macro domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031053  Chromodomain-helicase-DNA-binding protein 1-like
 IPR031916  DNA ligase 3, BRCT domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0032508 DNA duplex unwinding IEA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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