ENSDARG00000015906


Danio rerio

Features
Gene ID: ENSDARG00000015906
  
Biological name :mxtx2
  
Synonyms : mix-type homeobox gene 2 / mxtx2
  
Possible biological names infered from orthology : Q8N7U7 / tetrapeptide repeat homeobox 1 / TPRX1
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 29236274
Gene end: 29237815
  
Corresponding Affymetrix probe sets: Dr.8325.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000025485
NCBI entrez gene - 58078     See in Manteia.
RefSeq - NM_001079816
RefSeq Peptide - NP_001073284
swissprot - Q1RM27
ZFIN ID - ZDB-GENE-000710-6
Ensembl - ENSDARG00000015906
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TPRX1ENSG00000178928Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mxtx1 / mix-type homeobox gene 1 / TPRX1* / Q8N7U7* / tetrapeptide repeat homeobox 1*ENSDARG0000006938222


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001706 endoderm formation IMP
 biological_processGO:0007015 actin filament organization IMP
 biological_processGO:0007369 gastrulation IMP
 biological_processGO:0042074 cell migration involved in gastrulation IMP
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 biological_processGO:0060027 convergent extension involved in gastrulation IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000038 margin margin constricted , abnormal
margin morphology , abnormal
margin irregular spatial pattern , abnormal
Show

 ZFA:0000071 shield shield morphology , abnormal
Show

 ZFA:0000084 yolk yolk broken , abnormal
Show

 ZFA:0000088 YSL YSL disorganized , abnormal
Show

 ZFA:0000309 E-YSL E-YSL microvillus decreased length , abnormal
E-YSL microvillus decreased mass density , abnormal
E-YSL filamentous actin disorganized , abnormal
Show

 ZFA:0001094 whole organism whole organism lacks parts or has fewer parts of type presumptive endoderm , abnormal
Show

 ZFA:0001176 blastoderm blastoderm irregular spatial pattern , abnormal
blastoderm increased thickness , abnormal
blastoderm morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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