ENSDARG00000015917


Danio rerio

Features
Gene ID: ENSDARG00000015917
  
Biological name :rnft1
  
Synonyms : Q6NZ21 / ring finger protein, transmembrane 1 / rnft1
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNFT1 / Q5M7Z0 / Q9DCN7
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 28160265
Gene end: 28169169
  
Corresponding Affymetrix probe sets: Dr.6887.1.A1_at (Zebrafish Array)   NM_213228_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000013898
NCBI entrez gene - 406509     See in Manteia.
RefSeq - NM_213228
RefSeq Peptide - NP_998393
swissprot - Q6NZ21
ZFIN ID - ZDB-GENE-040426-2324
Ensembl - ENSDARG00000015917
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNFT1ENSGALG00000005205Gallus gallus
 RNFT1ENSG00000189050Homo sapiens
 Rnft1ENSMUSG00000020521Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnft2 / ring finger protein, transmembrane 2 / Q3UF64* / Q96EX2* / RING finger and transmembrane domain-containing protein 2 *ENSDARG0000005301933


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr