ENSDARG00000016080


Danio rerio

Features
Gene ID: ENSDARG00000016080
  
Biological name :nob1
  
Synonyms : NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) / nob1
  
Possible biological names infered from orthology : NIN1/PSMD8 binding protein 1 homolog / NIN1/RPN12 binding protein 1 homolog / Q8BW10 / Q9ULX3
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 5861755
Gene end: 5875433
  
Corresponding Affymetrix probe sets: Dr.24141.1.A1_x_at (Zebrafish Array)   Dr.9728.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000125998
NCBI entrez gene - 557254     See in Manteia.
swissprot - F1R4C1
swissprot - I3ISV3
ZFIN ID - ZDB-GENE-030131-3112
Ensembl - ENSDARG00000016080
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOB1ENSGALG00000000693Gallus gallus
 NOB1ENSG00000141101Homo sapiens
 Nob1ENSMUSG00000003848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR014881  Nin one binding (NOB1) Zn-ribbon-like
 IPR017117  Ribonuclease Nob1, eukaryote
 IPR029060  PIN-like domain superfamily
 IPR033411  Ribonuclease, PIN domain
 IPR033461  Putative WW-binding domain and destruction box


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000469 cleavage involved in rRNA processing IEA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 biological_processGO:0042274 ribosomal small subunit biogenesis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0030688 preribosome, small subunit precursor IBA
 molecular_functionGO:0004521 endoribonuclease activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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