ENSDARG00000016117


Danio rerio

Features
Gene ID: ENSDARG00000016117
  
Biological name :exd2
  
Synonyms : exd2 / exonuclease 3-5 domain containing 2
  
Possible biological names infered from orthology : Exonuclease 3-5 domain-containing protein 2 / Q8VEG4 / Q9NVH0
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 51796668
Gene end: 51818675
  
Corresponding Affymetrix probe sets: Dr.12669.1.A1_at (Zebrafish Array)   Dr.12753.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000098875
Ensembl peptide - ENSDARP00000129567
NCBI entrez gene - 334455     See in Manteia.
RefSeq - NM_001114406
RefSeq - XM_005169892
RefSeq Peptide - NP_001107878
swissprot - X1WH57
swissprot - F1QBW6
ZFIN ID - ZDB-GENE-030131-6387
Ensembl - ENSDARG00000016117
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EXD2ENSGALG00000009456Gallus gallus
 EXD2ENSG00000081177Homo sapiens
 Exd2ENSMUSG00000032705Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002562  3"-5" exonuclease domain
 IPR012337  Ribonuclease H-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008408 3"-5" exonuclease activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr