ENSDARG00000016156


Danio rerio

Features
Gene ID: ENSDARG00000016156
  
Biological name :fam53b
  
Synonyms : F1QN48 / fam53b / family with sequence similarity 53, member B
  
Possible biological names infered from orthology : Mus musculus family with sequence similarity 53, member B (Fam53b), transcript variant 3, mRNA. / Q14153 / Q8BGR5
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 46883785
Gene end: 46937956
  
Corresponding Affymetrix probe sets: Dr.11988.1.A1_at (Zebrafish Array)   NM_001007187_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000020465
Ensembl peptide - ENSDARP00000123381
NCBI entrez gene - 406586     See in Manteia.
RefSeq - XM_005156440
RefSeq - NM_001007187
RefSeq Peptide - NP_001007188
swissprot - F1QN48
swissprot - E9QCA8
ZFIN ID - ZDB-GENE-040426-2495
Ensembl - ENSDARG00000016156
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FAM53BENSGALG00000009718Gallus gallus
 FAM53BENSG00000189319Homo sapiens
 Fam53bENSMUSG00000030956Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:175066 / FAM53C* / Q8BXQ8* / Q9NYF3* / family with sequence similarity 53 member C* / Mus musculus family with sequence similarity 53, member C (Fam53c), transcript variant 2, mRNA.*ENSDARG0000004512723


Protein motifs (from Interpro)
Interpro ID Name
 IPR029356  Family of FAM53


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006606 protein import into nucleus IMP
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0031101 fin regeneration IMP
 biological_processGO:0048675 axon extension IMP
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001269 regenerating fin regenerating fin lepidotrichium malformed , abnormal
regenerating fin regenerating tissue decreased size , abnormal
regenerating fin regenerating tissue physical object quality , abnormal
Show

 ZFA:0009150 Rohon-Beard neuron Rohon-Beard neuron axon decreased length , abnormal
Rohon-Beard neuron axon decreased branchiness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr