ENSDARG00000018650


Danio rerio

Features
Gene ID: ENSDARG00000018650
  
Biological name :gtpbp3
  
Synonyms : GTP binding protein 3, mitochondrial / gtpbp3
  
Possible biological names infered from orthology : Q923K4 / Q969Y2 / tRNA modification GTPase GTPBP3, mitochondrial
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 6009984
Gene end: 6037759
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136836
Ensembl peptide - ENSDARP00000155544
Ensembl peptide - ENSDARP00000150831
Ensembl peptide - ENSDARP00000138822
Ensembl peptide - ENSDARP00000004190
NCBI entrez gene - 553807     See in Manteia.
RefSeq - NM_001020769
RefSeq Peptide - NP_001018605
swissprot - A0A077CZD0
swissprot - A0A0R4IP96
swissprot - F1Q694
swissprot - A0A077D3Q6
ZFIN ID - ZDB-GENE-050522-335
Ensembl - ENSDARG00000018650
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTPBP3ENSGALG00000037256Gallus gallus
 GTPBP3ENSG00000130299Homo sapiens
 Gtpbp3ENSMUSG00000007610Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004520  tRNA modification GTPase MnmE
 IPR005225  Small GTP-binding protein domain
 IPR006073  GTP binding domain
 IPR018948  GTP-binding protein TrmE, N-terminal
 IPR025867  MnmE, helical domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031168  TrmE-type guanine nucleotide-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006400 tRNA modification IEA
 biological_processGO:0008033 tRNA processing IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
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 ZFA:0000107 eye eye morphology , abnormal
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 ZFA:0000114 heart heart morphology , abnormal
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 ZFA:0000123 liver liver morphology , abnormal
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 ZFA:0000140 pancreas pancreas morphology , abnormal
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 ZFA:0001094 whole organism whole organism decreased pigmentation , abnormal
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 ZFA:0001117 post-vent region post-vent region curved , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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