ENSG00000130299


Homo sapiens

Features
Gene ID: ENSG00000130299
  
Biological name :GTPBP3
  
Synonyms : GTP binding protein 3, mitochondrial / GTPBP3 / Q969Y2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.11
Gene start: 17334920
Gene end: 17342735
  
Corresponding Affymetrix probe sets: 1555062_s_at (Human Genome U133 Plus 2.0 Array)   213835_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000472156
Ensembl peptide - ENSP00000469008
Ensembl peptide - ENSP00000354598
Ensembl peptide - ENSP00000351644
Ensembl peptide - ENSP00000313818
Ensembl peptide - ENSP00000473150
Ensembl peptide - ENSP00000470109
Ensembl peptide - ENSP00000471421
Ensembl peptide - ENSP00000471657
NCBI entrez gene - 84705     See in Manteia.
OMIM - 608536
RefSeq - NM_032620
RefSeq - NM_001128855
RefSeq - NM_001195422
RefSeq - NM_133644
RefSeq Peptide - NP_001122327
RefSeq Peptide - NP_598399
RefSeq Peptide - NP_116009
RefSeq Peptide - NP_001182351
swissprot - Q969Y2
swissprot - M0QXA1
swissprot - M0QYW1
swissprot - M0R0S9
swissprot - M0R161
swissprot - M0R1X0
Ensembl - ENSG00000130299
  
Related genetic diseases (OMIM): 616198 - Combined oxidative phosphorylation deficiency 23, 616198
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtpbp3ENSDARG00000018650Danio rerio
 GTPBP3ENSGALG00000037256Gallus gallus
 Gtpbp3ENSMUSG00000007610Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004520  tRNA modification GTPase MnmE
 IPR005225  Small GTP-binding protein domain
 IPR006073  GTP binding domain
 IPR018948  GTP-binding protein TrmE, N-terminal
 IPR025867  MnmE, helical domain
 IPR027368  tRNA modification GTPase MnmE domain 2
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031168  TrmE-type guanine nucleotide-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006400 tRNA modification IEA
 biological_processGO:0008033 tRNA processing IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
tRNA modification in the mitochondrion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001638 Cardiomyopathy 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003828 Variable expressivity 
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr