ENSDARG00000018961


Danio rerio

Features
Gene ID: ENSDARG00000018961
  
Biological name :gtpbp4
  
Synonyms : GTP binding protein 4 / gtpbp4
  
Possible biological names infered from orthology : Nucleolar GTP-binding protein 1 / Q99ME9 / Q9BZE4
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 42361373
Gene end: 42375275
  
Corresponding Affymetrix probe sets: Dr.25983.1.A1_at (Zebrafish Array)   Dr.7972.1.S1_at (Zebrafish Array)   NM_199851_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000002061
NCBI entrez gene - 334050     See in Manteia.
RefSeq - NM_199851
RefSeq Peptide - NP_956145
swissprot - Q6DRI5
ZFIN ID - ZDB-GENE-030131-5982
Ensembl - ENSDARG00000018961
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTPBP4ENSGALG00000006703Gallus gallus
 GTPBP4ENSG00000107937Homo sapiens
 Gtpbp4ENSMUSG00000021149Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006073  GTP binding domain
 IPR010674  Nucleolar GTP-binding protein 1, Rossman-fold domain
 IPR012973  NOG, C-terminal
 IPR024926  Nucleolar GTP-binding protein 1
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031167  OBG-type guanine nucleotide-binding (G) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain quality , abnormal
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 ZFA:0000084 yolk yolk quality , abnormal
yolk circular , abnormal
yolk grey , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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