ENSDARG00000020041


Danio rerio

Features
Gene ID: ENSDARG00000020041
  
Biological name :vps35l
  
Synonyms : A4VCH4 / vps35l / zgc:163107
  
Possible biological names infered from orthology : 9030624J02Rik / Q7Z3J2 / Q8BWQ6 / UPF0505 / VPS35 endosomal protein sorting factor like
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 11167870
Gene end: 11198776
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000052536
NCBI entrez gene - 563454     See in Manteia.
RefSeq - NM_001098181
RefSeq Peptide - NP_001091651
swissprot - A4VCH4
ZFIN ID - ZDB-GENE-070521-7
Ensembl - ENSDARG00000020041
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS35LENSGALG00000002119Gallus gallus
 Q7Z3J2ENSG00000103544Homo sapiens
 Q8BWQ6ENSMUSG00000030982Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005378  Vacuolar protein sorting-associated protein 35
 IPR029705  UPF0505 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030906 retromer, cargo-selective complex IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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