ENSDARG00000020595


Danio rerio

Features
Gene ID: ENSDARG00000020595
  
Biological name :gnl3l
  
Synonyms : gnl3l / guanine nucleotide binding protein-like 3 (nucleolar)-like
  
Possible biological names infered from orthology : G protein nucleolar 3 like / Q6PGG6 / Q9NVN8
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 25485774
Gene end: 25502491
  
Corresponding Affymetrix probe sets: Dr.3178.1.A1_at (Zebrafish Array)   NM_001002875_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000005405
NCBI entrez gene - 442932     See in Manteia.
RefSeq - NM_001002875
RefSeq Peptide - NP_001002875
swissprot - Q7SZX9
ZFIN ID - ZDB-GENE-040723-1
Ensembl - ENSDARG00000020595
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GNL3LENSG00000130119Homo sapiens
 Gnl3lENSMUSG00000025266Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gnl3 / guanine nucleotide binding protein-like 3 (nucleolar) / Q8CI11* / Q9BVP2* / G protein nucleolar 3*ENSDARG0000000621932


Protein motifs (from Interpro)
Interpro ID Name
 IPR006073  GTP binding domain
 IPR014813  Guanine nucleotide-binding protein-like 3, N-terminal domain
 IPR023179  GTP-binding protein, orthogonal bundle domain superfamily
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030378  Circularly permuted (CP)-type guanine nucleotide-binding (G) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IMP
 cellular_componentGO:0005730 nucleolus IBA
 molecular_functionGO:0003924 GTPase activity IBA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain quality , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
midbrain hindbrain boundary quality , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk non-functional , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0000368 integument integument discolored , abnormal
integument rough , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism dead , abnormal
whole organism cytosolic ribosome decreased amount , abnormal
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 ZFA:0001114 head head decreased size , abnormal
head apoptotic , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
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 ZFA:0001117 post-vent region post-vent region apoptotic , abnormal
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 ZFA:0001278 posterior chamber swim bladder posterior chamber swim bladder uninflated , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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