Manteia

ENSDARG00000020749

Danio rerio

Features

Gene ID:	ENSDARG00000020749

Biological name :	caprin2

Synonyms :	caprin2 / caprin family member 2 / Q5RJ80

Possible biological names infered from orthology :

Species:	Danio rerio

Chr. number:	4
Strand:	-1
Band:
Gene start:	16615026
Gene end:	16628802

Corresponding Affymetrix probe sets:	Dr.9471.1.A1_at (Zebrafish Array) NM_001013273_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000040707 Ensembl peptide - ENSDARP00000064008 NCBI entrez gene - 407729 See in Manteia. RefSeq - NM_001013273 RefSeq Peptide - NP_001013291 swissprot - F1Q502 swissprot - B7ZVU9 swissprot - Q5RJ80 ZFIN ID - ZDB-GENE-040812-2 Ensembl - ENSDARG00000020749

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name

Species

No match

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
caprin1a / cell cycle associated protein 1a / Q14444* / Q60865* / CAPRIN1* / cell cycle associated protein 1*	ENSDARG00000009346	19
caprin1b / cell cycle associated protein 1b / Q14444* / Q60865* / CAPRIN1* / cell cycle associated protein 1*	ENSDARG00000054272	18
c1ql3b / complement component 1, q subcomponent-like 3b / C1QL1* / O75973* / O88992* / C1q-related factor * / complement C1q like 1*	ENSDARG00000028521	8
c1ql4a / complement component 1, q subcomponent-like 4 / C1QL4* / Q4ZJM9* / Q86Z23* / complement C1q like 4* / Complement C1q-like protein 4 *	ENSDARG00000011549	7
cbln2b / cerebellin 2b precursor / CBLN2* / Q8IUK8* / Q8BGU2* / Cerebellin-2 * / cerebellin 2 precursor*	ENSDARG00000077151	7
c1ql2 / complement component 1, q subcomponent-like 2 / Q7Z5L3* / Q8CFR0* / complement C1q like 2* / Complement C1q-like protein 2 *	ENSDARG00000015592	7
c1ql3b / complement component 1, q subcomponent-like 3b / C1QL3* / Q5VWW1* / Q9ESN4* / complement C1q like 3* / Complement C1q-like protein 3 *	ENSDARG00000036483	7
c1ql3a / complement component 1, q subcomponent-like 3a / C1QL3* / Q5VWW1* / complement C1q like 3*	ENSDARG00000010350	7
si:dkey-5n18.1	ENSDARG00000043436	7
c1ql4b / complement component 1, q subcomponent-like 4b / C1QL4* / Q4ZJM9* / Q86Z23* / complement C1q like 4* / Complement C1q-like protein 4 *	ENSDARG00000055317	6
cbln2a / cerebellin 2a precursor / CBLN2* / Q8IUK8* / Q8BGU2* / Cerebellin-2 * / cerebellin 2 precursor*	ENSDARG00000074601	6
cbln4 / cerebellin 4 precursor / Q8BME9* / Q9NTU7* / Cerebellin-4 *	ENSDARG00000061240	6
cbln12 / cerebellin 12	ENSDARG00000068232	6
cbln1 / cerebellin 1 precursor / P23435* / Q9R171* / Cerebellin-1 Cerebellin [des-Ser1]-cerebellin*	ENSDARG00000057296	5
si:dkeyp-74b6.2	ENSDARG00000115070	5

Protein motifs (from Interpro)

Interpro ID	Name
IPR001073	C1q domain
IPR008983	Tumour necrosis factor-like domain superfamily
IPR022070	Cytoplasmic activation/proliferation-associated protein-1 C term
IPR028816	Caprin

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0009953	dorsal/ventral pattern formation	IMP
biological_process	GO:0017148	negative regulation of translation	IEA
biological_process	GO:0030154	cell differentiation	IEA
biological_process	GO:0030177	positive regulation of Wnt signaling pathway	IMP
biological_process	GO:0040008	regulation of growth	IEA
biological_process	GO:0050775	positive regulation of dendrite morphogenesis	ISS
biological_process	GO:0061003	positive regulation of dendritic spine morphogenesis	ISS
biological_process	GO:0090263	positive regulation of canonical Wnt signaling pathway	IMP
biological_process	GO:2000055	positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification	IMP
cellular_component	GO:0005737	cytoplasm	IEA
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0016020	membrane	IEA
molecular_function	GO:0003723	RNA binding	IEA
molecular_function	GO:0046872	metal ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000077	tail bud	tail bud protruding , abnormal	Show
ZFA:0000079	telencephalon	telencephalon increased size , abnormal	Show
ZFA:0001094	whole organism	whole organism wholly dorsalized , abnormal whole organism shape , abnormal	Show
ZFA:0001117	post-vent region	post-vent region decreased size , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr