ENSDARG00000020841


Danio rerio

Features
Gene ID: ENSDARG00000020841
  
Biological name :rbm7
  
Synonyms : rbm7 / RNA binding motif protein 7
  
Possible biological names infered from orthology : AP002373.1 / Q9CQT2 / Q9Y580
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 47301086
Gene end: 47306847
  
Corresponding Affymetrix probe sets: Dr.13662.1.S1_at (Zebrafish Array)   NM_199925_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000007431
NCBI entrez gene - 334784     See in Manteia.
RefSeq - NM_199925
RefSeq Peptide - NP_956219
swissprot - Q6P0F4
ZFIN ID - ZDB-GENE-030131-6724
Ensembl - ENSDARG00000020841
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM7ENSGALG00000007017Gallus gallus
 AP002373.1ENSG00000255663Homo sapiens
 RBM7ENSG00000076053Homo sapiens
 Rbm7ENSMUSG00000042396Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm11 / RNA binding motif protein 11 / P57052* / Q80YT9* / Splicing regulator RBM11 *ENSDARG0000009020218


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034500  RBM7, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IBA
 biological_processGO:0007409 axonogenesis IMP
 biological_processGO:0021693 cerebellar Purkinje cell layer structural organization IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain morphology , abnormal
Show

 ZFA:0000100 cerebellum cerebellum structure , abnormal
cerebellum Purkinje cell distributed , abnormal
Show

 ZFA:0000387 motor nucleus of vagal nerve motor nucleus of vagal nerve shortened , abnormal
Show

 ZFA:0009052 motor neuron motor neuron axon truncated , abnormal
motor neuron axon branchiness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr