ENSDARG00000020913


Danio rerio

Features
Gene ID: ENSDARG00000020913
  
Biological name :ddx56
  
Synonyms : ddx56 / DEAD (Asp-Glu-Ala-Asp) box helicase 56
  
Possible biological names infered from orthology : DEAD-box helicase 56 / Probable ATP-dependent RNA helicase DDX56 / Q9D0R4 / Q9NY93
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 2856377
Gene end: 2875735
  
Corresponding Affymetrix probe sets: Dr.25720.1.A1_at (Zebrafish Array)   NM_001003876_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000035846
NCBI entrez gene - 445399     See in Manteia.
RefSeq - NM_001003876
RefSeq Peptide - NP_001003876
swissprot - Q6DRE7
ZFIN ID - ZDB-GENE-040825-3
Ensembl - ENSDARG00000020913
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX56ENSG00000136271Homo sapiens
 Ddx56ENSMUSG00000004393Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk quality , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000109 forebrain forebrain quality , abnormal
forebrain decreased size , abnormal
forebrain pointed , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0001114 head head decreased width , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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