ENSDARG00000021864


Danio rerio

Features
Gene ID: ENSDARG00000021864
  
Biological name :rplp1
  
Synonyms : ribosomal protein, large, P1 / rplp1
  
Possible biological names infered from orthology : Gm10073 / P05386 / P47955 / ribosomal protein lateral stalk subunit P1
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 1852078
Gene end: 1855368
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000033600
Ensembl peptide - ENSDARP00000118880
NCBI entrez gene - 336719     See in Manteia.
swissprot - E9QHS9
swissprot - Q6P5K5
ZFIN ID - ZDB-GENE-030131-8663
Ensembl - ENSDARG00000021864
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPLP1ENSGALG00000030878Gallus gallus
 RPLP1ENSG00000137818Homo sapiens
 Gm10073ENSMUSG00000060019Mus musculus
 Rplp1ENSMUSG00000007892Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR027534  Ribosomal protein L12 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006414 translational elongation IEA
 biological_processGO:0030218 erythrocyte differentiation IMP
 biological_processGO:0032147 activation of protein kinase activity IEA
 biological_processGO:0045860 positive regulation of protein kinase activity IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0030295 protein kinase activator activity IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain aplastic , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary quality , abnormal
midbrain hindbrain boundary condensed , abnormal
Show

 ZFA:0000076 swim bladder swim bladder quality , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
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 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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