ENSDARG00000022493


Danio rerio

Features
Gene ID: ENSDARG00000022493
  
Biological name :rad21l1
  
Synonyms : RAD21 cohesin complex component like 1 / rad21l1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 49117506
Gene end: 49140645
  
Corresponding Affymetrix probe sets: Dr.15478.1.A1_at (Zebrafish Array)   NM_001080050_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000074083
NCBI entrez gene - 571082     See in Manteia.
RefSeq - NM_001080050
RefSeq - XM_021478297
RefSeq Peptide - NP_001073519
swissprot - A0JMM5
ZFIN ID - ZDB-GENE-061103-505
Ensembl - ENSDARG00000022493
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rad21b / RAD21 cohesin complex component b / RAD21* / Q61550* / O60216* / Double-strand-break repair * / RAD21 cohesin complex component*ENSDARG0000003565541
rad21a / RAD21 cohesin complex component a / RAD21* / Q61550* / O60216* / Double-strand-break repair * / RAD21 cohesin complex component*ENSDARG0000000609240


Protein motifs (from Interpro)
Interpro ID Name
 IPR006909  Rad21/Rec8-like protein, C-terminal, eukaryotic
 IPR006910  Rad21/Rec8-like protein, N-terminal
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006302 double-strand break repair IBA
 biological_processGO:0007062 sister chromatid cohesion IBA
 cellular_componentGO:0000228 nuclear chromosome IEA
 cellular_componentGO:0000798 nuclear cohesin complex IBA
 molecular_functionGO:0003682 chromatin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr