ENSDARG00000023472


Danio rerio

Features
Gene ID: ENSDARG00000023472
  
Biological name :ctnnb2
  
Synonyms : catenin, beta 2 / ctnnb2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 47975916
Gene end: 47997424
  
Corresponding Affymetrix probe sets: Dr.280.1.S1_at (Zebrafish Array)   NM_001001889_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000076115
NCBI entrez gene - 324004     See in Manteia.
RefSeq - NM_001001889
RefSeq Peptide - NP_001001889
swissprot - E7FC99
ZFIN ID - ZDB-GENE-040426-2575
Ensembl - ENSDARG00000023472
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ctnnb1 / catenin (cadherin-associated protein), beta 1 / P35222* / catenin beta 1*ENSDARG0000001457193
jupb / junction plakoglobin b / JUP* / P14923* / Q02257* / junction plakoglobin*ENSDARG0000005906761
jupa / junction plakoglobin a / JUP* / P14923* / Q02257* / junction plakoglobin*ENSDARG0000007078761


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR013284  Beta-catenin
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0034333 adherens junction assembly IEA
 biological_processGO:0060026 convergent extension IGI
 biological_processGO:0060070 canonical Wnt signaling pathway IGI
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016342 catenin complex IBA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019903 protein phosphatase binding IBA
 molecular_functionGO:0045294 alpha-catenin binding IBA
 molecular_functionGO:0045296 cadherin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased amount , abnormal
Show

 ZFA:0000075 spinal cord spinal cord decreased length , abnormal
spinal cord decreased width , abnormal
Show

 ZFA:0000107 eye eye aplastic , abnormal
Show

 ZFA:0000109 forebrain forebrain aplastic , abnormal
Show

 ZFA:0000135 notochord notochord aplastic , abnormal
Show

 ZFA:0001058 caudal fin caudal fin multiple , abnormal
caudal fin decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism wholly ventralized , abnormal
whole organism posterior region malformed , abnormal
Show

 ZFA:0001114 head head necrotic , abnormal
Show

 ZFA:0001135 neural tube neural tube distended , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr