ENSDARG00000024325
Danio rerio | |
Features
| Gene ID: | ENSDARG00000024325 | | | | | Biological name : | col4a3bpa | | | | | Synonyms : | col4a3bpa / collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a | | | | | Possible biological names infered from orthology : | COL4A3BP / collagen type IV alpha 3 binding protein / Q9EQG9 / Q9Y5P4 | | | | | Species: | Danio rerio | | | | | Chr. number: | 5 | | Strand: | 1 | | Band: | | | Gene start: | 50912729 | | Gene end: | 50970974 | | | | | Corresponding Affymetrix probe sets: | Dr.16824.1.A1_at (Zebrafish Array) NM_001017914_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000087370
Ensembl peptide - ENSDARP00000124594
Ensembl peptide - ENSDARP00000153901
Ensembl peptide - ENSDARP00000155854
Ensembl peptide - ENSDARP00000123967
Ensembl peptide - ENSDARP00000124986
NCBI entrez gene - 796455
See in Manteia.
RefSeq - NM_001017914
RefSeq Peptide - NP_001017914
swissprot - F2Z4S5
swissprot - F8W2V5
swissprot - F8W476
swissprot - F8W5T2
ZFIN ID - ZDB-GENE-080724-10
Ensembl - ENSDARG00000024325
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| col4a3bpb / collagen, type IV, alpha 3 (Goodpasture antigen) binding protein b | ENSDARG00000102372 | 64 | | plekha8 / pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 / Q80W71* / Q96JA3* / pleckstrin homology domain containing A8* / Pleckstrin homology ... | ENSDARG00000040698 | 15 | | plekha3 / pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 / Q9ERS4* / Q9HB20* / pleckstrin homology domain containing A3* / Pleckstrin homology ... | ENSDARG00000056601 | 11 |
Protein motifs (from Interpro)
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000008 | brain | brain apoptotic , abnormal |
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| | ZFA:0000107 | eye | eye decreased size , abnormal |
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| | ZFA:0000110 | fourth ventricle | fourth ventricle edematous , abnormal |
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| | ZFA:0000155 | somite | somite apoptotic , abnormal
somite decreased size , abnormal |
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| | ZFA:0000318 | brainstem and spinal white matter | brainstem and spinal white matter decreased amount , abnormal |
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| | ZFA:0000473 | trunk musculature | trunk musculature disorganized , abnormal |
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| | ZFA:0001114 | head | head decreased size , abnormal |
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Interacting proteins (from Reactome)
| ENSDARG00000070435 | vapb / VAMP (vesicle-associated membrane protein)-associated protein B and C / O95292* / VAMP associated protein B and C* / vesicle-associated membrane protein, associated protein B and C* | / complex / reaction | | ENSDARG00000063218 | ppm1la / protein phosphatase, Mg2+/Mn2+ dependent, 1La / PPM1L* / Q8BHN0* / Q5SGD2* / Protein phosphatase 1L * / protein phosphatase, Mg2+/Mn2+ dependent 1L* | / complex / reaction | | ENSDARG00000075949 | prkd1 / protein kinase D1 / Q15139* / Q62101* | / reaction | | ENSDARG00000089641 | ppm1lb / protein phosphatase, Mg2+/Mn2+ dependent, 1Lb / PPM1L* / Q8BHN0* / Q5SGD2* / Protein phosphatase 1L * / protein phosphatase, Mg2+/Mn2+ dependent 1L* | / complex / reaction | | ENSDARG00000079967 | prkd3 / protein kinase D3 / O94806* / Q8K1Y2* | / reaction |
0 s.
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